Category: genetics viz
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Hapstar 0.5
Hapstar is released, and now has it’s own website. Here’s a screenshot of an example haplotype network of human and neanderthal DNA sequences.
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HapStar
Hapstar is the new name for my little bioinformatics project, visualising population structure from differences between genetic sequences. The last few days I’ve done a lot of work on the GUI, allowing you to drag nodes around by hand, zoom in and out and navigate the graph. Also quite a bit of graph theory, validating…
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Hapnet
A small bioinformatics project in progress: Haplotype networks and Minimum Spanning Networks are commonly used for representing associations between sequences. HapNet is a tool for viewing both types of networks, using the output data generated from Arlequin. HapNet automatically formats the network in the optimal layout for easy visualisation, and publication-ready figures can be exported…
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Accidental graph art
If I ran one of these new fangled ‘new media arts’ courses (or whatever they are called now) I’d force students to restrict themselves to only using graphviz for several months. These are some accidents which happened trying to visualise haplotype networks for some biology visualisation work I’m doing: Alex Mclean has some more impressive…